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Benchling Inc crispr genome engineering tool
Crispr Genome Engineering Tool, supplied by Benchling Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/crispr+genome+engineering+tool/crispr+engineering+genome+tool/pmc12815461-137-33-32
Average 86 stars, based on 1 article reviews
crispr genome engineering tool - by Bioz Stars, 2026-10
86/100 stars

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Related Articles

Knock-In:

Article Title: GMCL1 controls 53BP1 stability and modulates taxane sensitivity
Article Snippet: .. To generate GMCL1 2x Flag knock-in HCT116 cells, an optimal gRNA target sequence closest to the genomic target site and a ~2 kb homologous recombination (HR) donor template was designed using the Benchling CRISPR Genome Engineering tool. .. The HR donor template was designed to introduce a 2x Flag tag in frame with the C terminus of GMCL1 , in the following order: GMCL1-linker-FLAG-linker-FLAG-Stop codon and was purchased from VectorBuilder ( https://en.vectorbuilder.com/ ).

Sequencing:

Article Title: GMCL1 controls 53BP1 stability and modulates taxane sensitivity
Article Snippet: .. To generate GMCL1 2x Flag knock-in HCT116 cells, an optimal gRNA target sequence closest to the genomic target site and a ~2 kb homologous recombination (HR) donor template was designed using the Benchling CRISPR Genome Engineering tool. .. The HR donor template was designed to introduce a 2x Flag tag in frame with the C terminus of GMCL1 , in the following order: GMCL1-linker-FLAG-linker-FLAG-Stop codon and was purchased from VectorBuilder ( https://en.vectorbuilder.com/ ).

Homologous Recombination:

Article Title: GMCL1 controls 53BP1 stability and modulates taxane sensitivity
Article Snippet: .. To generate GMCL1 2x Flag knock-in HCT116 cells, an optimal gRNA target sequence closest to the genomic target site and a ~2 kb homologous recombination (HR) donor template was designed using the Benchling CRISPR Genome Engineering tool. .. The HR donor template was designed to introduce a 2x Flag tag in frame with the C terminus of GMCL1 , in the following order: GMCL1-linker-FLAG-linker-FLAG-Stop codon and was purchased from VectorBuilder ( https://en.vectorbuilder.com/ ).

CRISPR:

Article Title: GMCL1 controls 53BP1 stability and modulates taxane sensitivity
Article Snippet: .. To generate GMCL1 2x Flag knock-in HCT116 cells, an optimal gRNA target sequence closest to the genomic target site and a ~2 kb homologous recombination (HR) donor template was designed using the Benchling CRISPR Genome Engineering tool. .. The HR donor template was designed to introduce a 2x Flag tag in frame with the C terminus of GMCL1 , in the following order: GMCL1-linker-FLAG-linker-FLAG-Stop codon and was purchased from VectorBuilder ( https://en.vectorbuilder.com/ ).

Article Title: GMCL1 controls 53BP1 stability and modulates taxane sensitivity
Article Snippet: .. In brief, to generate GMCL1 -knockout U-2 OS cells, optimal gRNA target sequences closest to the start codon of the genes were designed using the Benchling CRISPR Genome Engineering tool ( https://www.benchling.com ). .. For transient Cas9 expression, gRNAs specific to the GMCL1 gene was incorporated into the pRP [CRISPR]-Hygro-hCas9-U6 vector, which was obtained from VectorBuilder ( https://en.vectorbuilder.com/ ).

Article Title: Distinct Perception Mechanisms of BACH1 Quaternary Structure Degrons by Two F-box Proteins under Oxidative Stress
Article Snippet: Samples of the cell lysates were then prepared with NuPAGE LDS Sample Buffer (Thermo Fisher Scientific) supplemented with ꞵ-mercaptoethanol (Sigma-Aldrich) and changes in protein levels were visualized via Western blot. .. To generate FBXO22 knockout cells, optimal sgRNA target sequences were designed using the Benchling CRISPR Genome Engineering tool ( https://www.benchling.com ). .. FBXO22 gRNA (CTTCGTGTTGAGTAACCTGG) was cloned into pSpCas9(BB)-2A-GFP (px458), a gift from F. Zhang (Addgene plasmid #48138), using the following primers: CACCGCTTCGTGTTGAGTAACCTGG and aaacCCAGGTTACTCAACACGAAGC.

Article Title: Induction of IFIT1/IFIT3 and inhibition of Bcl-2 orchestrate the treatment of myeloma and leukemia via pyroptosis.
Article Snippet: Induction of pyroptosis is proposed as a promising strategy for the treatment of hematological malignancies, but little is known.. In the present study, we find clioquinol (CLQ), an anti-parasitic drug, induces striking myeloma and leukemia cell pyroptosis on a drug screen.. RNA sequencing reveals that the interferon-inducible genes IFIT1 and IFIT3 are markedly upregulated and are essential for CLQ-induced GSDME activation and cell pyroptosis.

Article Title: The E3 ligase RNF32 controls the IκB kinase complex and NF-κB signaling in intestinal stem cells.
Article Snippet: Proteins were then eluted with Strep-Tactin Elution buffer (Iba 2-1000-025), and the eluate was incubated with anti-FLAG agarose resin and analyzed by mass spectrometry as described above. .. To generate RNF32-/- HCT116 and SW480 cells, three gRNAs targeting exon 1 and exon 8 or exon 1 and exon 7 were designed using the Benchling CRISPR Genome Engineering tool and cloned into pSpCas9(BB)-2A-GFP (PX458). .. Briefly, 3% acetic acid was applied to the slides for 3 minutes, followed by the addition of AB solution (#4987481211568, FUJIFILM) for 30 minutes.

Article Title: microRNA-637/661 ameliorate hypoxic-induced pulmonary arterial hypertension by targeting TRIM29 signaling pathway
Article Snippet: Lipofectamine ® 2000 was obtained from Invitrogen (Carlsbad, CA, USA). .. To generate TRIM29-knockout HPASMCs, optimal gRNA target sequences were designed via the Benchling CRISPR Genome Engineering tool ( https://www.benchling.com ). sgRNAs of TRIM29: 5’-GACCTTTCTGGCAGGCGTCT-3’ and 5’-AGCTTCCATCGCAGGGTGCT-3’. ..

Article Title: CDK-independent role of D-type cyclins in regulating DNA mismatch repair
Article Snippet: .. In brief, to generate CCND1, CCND2, CDKN1A knockout cells, optimal gRNA target sequences closest to the start codon of the genes were designed using the Benchling CRISPR Genome Engineering tool ( https://www.benchling.com ). ..

Knock-Out:

Article Title: GMCL1 controls 53BP1 stability and modulates taxane sensitivity
Article Snippet: .. In brief, to generate GMCL1 -knockout U-2 OS cells, optimal gRNA target sequences closest to the start codon of the genes were designed using the Benchling CRISPR Genome Engineering tool ( https://www.benchling.com ). .. For transient Cas9 expression, gRNAs specific to the GMCL1 gene was incorporated into the pRP [CRISPR]-Hygro-hCas9-U6 vector, which was obtained from VectorBuilder ( https://en.vectorbuilder.com/ ).

Article Title: Distinct Perception Mechanisms of BACH1 Quaternary Structure Degrons by Two F-box Proteins under Oxidative Stress
Article Snippet: Samples of the cell lysates were then prepared with NuPAGE LDS Sample Buffer (Thermo Fisher Scientific) supplemented with ꞵ-mercaptoethanol (Sigma-Aldrich) and changes in protein levels were visualized via Western blot. .. To generate FBXO22 knockout cells, optimal sgRNA target sequences were designed using the Benchling CRISPR Genome Engineering tool ( https://www.benchling.com ). .. FBXO22 gRNA (CTTCGTGTTGAGTAACCTGG) was cloned into pSpCas9(BB)-2A-GFP (px458), a gift from F. Zhang (Addgene plasmid #48138), using the following primers: CACCGCTTCGTGTTGAGTAACCTGG and aaacCCAGGTTACTCAACACGAAGC.

Article Title: CDK-independent role of D-type cyclins in regulating DNA mismatch repair
Article Snippet: .. In brief, to generate CCND1, CCND2, CDKN1A knockout cells, optimal gRNA target sequences closest to the start codon of the genes were designed using the Benchling CRISPR Genome Engineering tool ( https://www.benchling.com ). ..

other:

Article Title: Recognition of BACH1 quaternary structure degrons by two F-box proteins under oxidative stress.
Article Snippet: FBXO22 gRNA (CTTCGTGTTGAGTAACCTGG) was cloned into pSpCas9(BB)-2A-GFP (px458), a gift from F. Zhang (Addgene plasmid #48138), using the following primers: CACCGCTTC GTGTTGAGTAACCTGG and aaacCCAGGTTACTCAACACGAAGC.

Clone Assay:

Article Title: The E3 ligase RNF32 controls the IκB kinase complex and NF-κB signaling in intestinal stem cells.
Article Snippet: Proteins were then eluted with Strep-Tactin Elution buffer (Iba 2-1000-025), and the eluate was incubated with anti-FLAG agarose resin and analyzed by mass spectrometry as described above. .. To generate RNF32-/- HCT116 and SW480 cells, three gRNAs targeting exon 1 and exon 8 or exon 1 and exon 7 were designed using the Benchling CRISPR Genome Engineering tool and cloned into pSpCas9(BB)-2A-GFP (PX458). .. Briefly, 3% acetic acid was applied to the slides for 3 minutes, followed by the addition of AB solution (#4987481211568, FUJIFILM) for 30 minutes.



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86
Benchling Inc crispr genome engineering tool
Crispr Genome Engineering Tool, supplied by Benchling Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/crispr+genome+engineering+tool/crispr+engineering+genome+tool/pmc12815461-137-33-32
Average 86 stars, based on 1 article reviews
crispr genome engineering tool - by Bioz Stars, 2026-10
86/100 stars
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